Publications of Nico Scherf
All genres
Journal Article (28)
2025
Journal Article
Ruthig, P., , , Scherf, N., , & (2025). Hemispheric asymmetry of intracortical myelin orientation in the mouse auditory cortex. European Journal of Neuroscience, 61. doi:10.1111/ejn.16675
2023
Journal Article
, , , , , , … (2023). A standardized clinical data harmonization pipeline for scalable AI application deployment (FHIR-DHP): Validation and usability study. JMIR Medical Informatics (JMI), 11. doi:10.2196/43847
2022
Journal Article
Scherf, N., , … (2022). Automatic lung segmentation and quantification of aeration in computed tomography of the chest using 3D transfer learning. Frontiers in Physiology, 12. doi:10.3389/fphys.2021.725865
, , , , 2021
Journal Article
Scherf, N. (2021). How to predict relapse in leukemia using time series data: A comparative in silico study. PLoS One, 16. doi:10.1371/journal.pone.0256585
, , , , , , …
Journal Article
Waschke, J., , , , , , & Scherf, N. (2021). linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser. PLoS Computational Biology, 17. doi:10.1371/journal.pcbi.1009503
Journal Article
Scherf, N., , , , , … (2021). Involvement of GPR17 in neuronal fibre outgrowth. International Journal of Molecular Sciences, 22. doi:10.3390/ijms222111683
,
Journal Article
Zoraghi, M., Scherf, N., Jäger, C., , , , & Weiskopf, N. (2021). Simulating local deformations in the human cortex due to blood flow-induced changes in mechanical tissue properties: Impact on functional magnetic resonance imaging. Frontiers in Neuroscience, 15. doi:10.3389/fnins.2021.722366
Journal Article
Scherf, N. (2021). TraCurate: Efficiently curating cell tracks. SoftwareX, 13. doi:10.1016/j.softx.2021.100656
, , , , , & 2020
Journal Article
Scherf, N. (2020). Domain-specific cues improve robustness of deep learning-based segmentation of CT volumes. Scientific Reports, 10. doi:10.1038/s41598-020-67544-y
, , , , , , & 2019
Journal Article
Thierbach, K., , Waschke, J., , , … (2019). Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish. Nature Communications, 10. doi:10.1038/s41467-019-13625-0
,
Journal Article
Scherf, N., & (2019). Ontology patterns for the representation of quality changes of cells in time. Journal of Biomedical Semantics, 10. doi:10.1186/s13326-019-0206-4
,
Journal Article
Scherf, N., & (2019). A pattern-based approach to a cell tracking ontology. Procedia Computer Science, 159, 784–793.
, 2018
Journal Article
Kirilina, E., Scherf, N., Jäger, C., , Trampel, R., … Weiskopf, N. (2018). Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology. NeuroImage, 182, 417–428.
, 2017
Journal Article
Scherf, N., , , , & (2017). Cell-accurate optical mapping across the entire developing heart. ELife, 6. doi:10.7554/eLife.28307.001
,
Journal Article
Scherf, N., , , & (2017). Spatiotemporal deformable prototypes for motion anomaly detection. International Journal of Computer Vision, 122, 502–523.
, 2015
Journal Article
Scherf, N., & (2015). The smart and gentle microscope. Nature Biotechnology, 33, 815–818.
Journal Article
Scherf, N., , , & (2015). P2Y1 receptor mediated neuronal fibre outgrowth in organotypic brain slice co-cultures. Neuropharmacology, 93, 252–266.
, ,
Journal Article
Scherf, N., … (2015). Factor graph analysis of live cell–imaging data reveals mechanisms of cell fate decisions. Bioinformatics, 31, 1816–1823.
, , , , ,
Journal Article
Scherf, N., , , & (2015). Mesenchymal stem cells support neuronal fiber growth in an organotypic brain slice co-culture model. Stem Cells and Development, 24, 824–835.
, ,
Journal Article
Scherf, N., , , , & (2015). Nimodipine enhances neurite outgrowth in dopaminergic brain slice co‐cultures. International Journal of Developmental Neuroscience, 40, 1–11.
, ,